DEVA

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Targeted Enrichment and Microarrays
SeqCap EZ
Sequence Capture Arrays
CGH/CNV
CGX 		ChIP-chip
DNA Methylation
Gene Expression
CGS
Instruments, Software, and Training
MS 200 Scanner
12 Bay Hybridization System
4 Bay Hybridization System
Microarray Dryer 		Kits & Consumables
NimbleScan Software
SignalMap Software
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 Array Services
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DEVA Software Graphic
Description Catalog Number Pack Size Compatible Applications Ordering*
DEVA Software
v1.2		 06264859001 1 User License CGH/CNV
CGH/LOH
CGX
AccuSNP
ChIP-chip
DNA Methylation
Gene Expression		 Download DEVA
* DEVA is available free of charge online but you must fill out a form to download the software.
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Description

DEVA software is a computer application that automates the feature extraction, primary data analysis, and visualization process for Roche NimbleGen arrays. Using Roche NimbleGen design files and scanned array images, DEVA software will automatically detect new scanned array images, process them, and run the analyses.

Images generated by the NimbleGen MS 200 Microarray Scanner can be deposited in a location on a networked drive that is available to the computer running DEVA software. DEVA software automatically monitors the image directory and, after loading the design files, imports the images. By matching the barcode of the image with the barcode of the design file, the software automatically performs the bursting, aligning, and feature extraction functions. Next, DEVA software will perform the analysis that you chose for each application.

At the end of the automated process, you will have analyzed data that you can review in the data viewer, eliminating the manual processing steps that are currently needed for NimbleGen array data. In addition, you can view associated annotation files in the same data viewer and map your data to annotations.

The more arrays that you run, the more savings that you can realize from DEVA software. You will reduce the labor cost per array and eliminate many of the manual data processing steps.

Compatibility/Requirements

Compatibility

DEVA Software is compatible with the following operating systems:

  • Windows 7 (64-bit version)
  • Windows 7 (32-bit version)
  • Windows XP (32-bit version)

System Requirements
Operating System Microsoft Windows XP x32
or
Windows 7 x32		 Microsoft Windows 7 x64
Processor 1.5 GHz, 32-bit, Intel Processor 2.0 GHz, 64-bit, Intel Processor
Memory 4 GB 8 to 10 GB
(2.1 million arrays or 2 µm scanned images require at least 8G and a 64-bit processor; 4.2 million arrays require at least 10 GB of memory)
Hard Drive Disk Space available for installation 1 GB
(20 GB recommended for data)		 1 GB
(100 GB recommended for data)
Monitor XVGA with 1024 x 768 resolution1 XVGA with 1400 x 1050 resolution
Keyboard and Mouse Standard Standard
Supported Arrays
  • 3x720K arrays
  • 6x315K arrays
  • 12x135K arrays
  • 385K arrays
  • 4x72K arrays
  • 4.2M arrays2
  • 3x1.4M arrays
  • 6x630K arrays
  • 12x270K arrays
  • 2.1M arrays3
  • 3x720K arrays
  • 6x315K arrays
  • 12x135K arrays
  • 385K arrays
  • 4x72K arrays
1 The minimum supported screen resolution on a Windows 7 operating system is 1158x870 pixels.
2 If you are processing scanned images acquired from NimbleGen 4.2M arrays and scanned at 2 μm resolution, your system must include a 2.0 GHz, 64-bit processor and 10GB RAM for data processing.
3 If you are processing scanned images acquired from NimbleGen 2.1M arrays and scanned at 2 μm resolution, your system must include a 2.0 GHz, 64-bit processor and 8GB RAM for data processing.

Advantages

  • One program for NimbleGen two color analysis
  • Automated data processing workflow
  • Integration with the MS 200 scanner
  • Expanded CGH visualization tools
  • Association between design files and slide barcodes
  • Customizable data export files
  • Export files compatible with:
  • - PerkinElmer Genoglyphix™
  • - Biodiscovery Nexus™
  • - Infoquant CGH Fusion™

Tutorial

  • DEVA Tutorial Files
    Download this archive of data and image files to work through the tutorial in the DEVA Software User's Guide.
    Data Files (ZIP Format 900MB)
    Note: This is a large file that requires time and bandwidth to download.

Accessory Files

In order to process your Expression slide images using individual design files in the DEVA software, you will need the Expression POS file. Please use the link below to download a zip archive of this file.

Literature

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